J3_7RQC_045

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQC_045 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0784

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

7RQC|1|2a|C|936
7RQC|1|2a|A|937
7RQC|1|2a|A|938
7RQC|1|2a|G|939
*
7RQC|1|2a|C|1344
7RQC|1|2a|U|1345
7RQC|1|2a|A|1346
7RQC|1|2a|G|1347
7RQC|1|2a|U|1348
7RQC|1|2a|A|1349
7RQC|1|2a|A|1350
*
7RQC|1|2a|U|1372
7RQC|1|2a|G|1373
7RQC|1|2a|A|1374
7RQC|1|2a|A|1375
7RQC|1|2a|U|1376
7RQC|1|2a|A|1377
7RQC|1|2a|C|1378
7RQC|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9