J3_7RQC_058

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQC_058 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0615

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7RQC|1|1A|G|1424
7RQC|1|1A|G|1425
7RQC|1|1A|G|1426
7RQC|1|1A|A|1427
7RQC|1|1A|C|1428
7RQC|1|1A|G|1429
*
7RQC|1|1A|C|1564
7RQC|1|1A|C|1565
*
7RQC|1|1A|G|1568
7RQC|1|1A|A|1569
7RQC|1|1A|A|1570
7RQC|1|1A|A|1571
7RQC|1|1A|A|1572
7RQC|1|1A|G|1573
7RQC|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2