J3_7RQD_054

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7RQD|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQD_054 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1124

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7RQD|1|2a|C|1237
7RQD|1|2a|A|1238
7RQD|1|2a|A|1239
7RQD|1|2a|U|1240
7RQD|1|2a|G|1241
*
7RQD|1|2a|C|1296
7RQD|1|2a|C|1297
7RQD|1|2a|C|1298
7RQD|1|2a|A|1299
7RQD|1|2a|G|1300
7RQD|1|2a|U|1301
7RQD|1|2a|U|1302
7RQD|1|2a|C|1303
*
7RQD|1|2a|G|1334
7RQD|1|2a|C|1335
7RQD|1|2a|C|1336
7RQD|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx