J3_7RQD_056

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7RQD|1|1A|U|448, 7RQD|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQD_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0573

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

7RQD|1|1A|C|32
7RQD|1|1A|U|33
7RQD|1|1A|C|34
7RQD|1|1A|G|35
*
7RQD|1|1A|C|445
7RQD|1|1A|G|446
7RQD|1|1A|A|447
7RQD|1|1A|U|448
7RQD|1|1A|A|449
7RQD|1|1A|G|450
7RQD|1|1A|C|451
7RQD|1|1A|G|452
7RQD|1|1A|C|453
7RQD|1|1A|A|454
7RQD|1|1A|C|455
7RQD|1|1A|C|456
7RQD|1|1A|A|457
7RQD|1|1A|G|458
7RQD|1|1A|U|459
7RQD|1|1A|A|460
7RQD|1|1A|C|461
*
7RQD|1|1A|G|468
7RQD|1|1A|G|469
7RQD|1|1A|A|470
7RQD|1|1A|A|471
7RQD|1|1A|A|472
7RQD|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23