J3_7RQD_069

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQD_069 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0658

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7RQD|1|2A|G|1424
7RQD|1|2A|G|1425
7RQD|1|2A|G|1426
7RQD|1|2A|A|1427
7RQD|1|2A|C|1428
7RQD|1|2A|G|1429
*
7RQD|1|2A|C|1564
7RQD|1|2A|C|1565
*
7RQD|1|2A|G|1568
7RQD|1|2A|A|1569
7RQD|1|2A|A|1570
7RQD|1|2A|A|1571
7RQD|1|2A|A|1572
7RQD|1|2A|G|1573
7RQD|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2