J3_7RQE_038

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQE_038 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0485

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7RQE|1|2A|U|2091
7RQE|1|2A|U|2092
7RQE|1|2A|G|2093
*
7RQE|1|2A|C|2196
7RQE|1|2A|U|2197
7RQE|1|2A|A|2198
7RQE|1|2A|A|2199
7RQE|1|2A|C|2200
*
7RQE|1|2A|G|2223
7RQE|1|2A|G|2224
7RQE|1|2A|A|2225
7RQE|1|2A|C|2226
7RQE|1|2A|A|2227
7RQE|1|2A|G|2228

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2D

50S ribosomal protein L2

Chain 2I

50S ribosomal protein L9