J3_7RR5_002
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7RR5_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.1042
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7RR5|1|C1|A|369
7RR5|1|C1|U|370
7RR5|1|C1|G|371
7RR5|1|C1|A|372
7RR5|1|C1|A|373
7RR5|1|C1|A|374
7RR5|1|C1|A|375
7RR5|1|C1|G|376
*
7RR5|1|C1|C|403
7RR5|1|C1|G|404
*
7RR5|1|C3|C|19
7RR5|1|C3|U|20
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- RPL4A isoform 1
- Chain LY
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L39
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