J3_7RR5_005

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

7RR5|1|C1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_005 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.116

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

7RR5|1|C1|A|828
7RR5|1|C1|U|829
7RR5|1|C1|A|830
7RR5|1|C1|G|831
*
7RR5|1|C1|C|863
7RR5|1|C1|G|864
7RR5|1|C1|U|865
7RR5|1|C1|A|866
7RR5|1|C1|G|867
*
7RR5|1|C1|U|892
7RR5|1|C1|C|893
7RR5|1|C1|G|894
7RR5|1|C1|A|895
7RR5|1|C1|A|896
7RR5|1|C1|U|897

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-B

Chain LR

60S ribosomal protein L19-A

Chain Lg

60S ribosomal protein L34-A