J3_7RR5_007

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_007 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2321

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|G|1230
7RR5|1|C1|A|1231
7RR5|1|C1|C|1232
*
7RR5|1|C1|G|1256
7RR5|1|C1|C|1257
7RR5|1|C1|U|1258
7RR5|1|C1|A|1259
7RR5|1|C1|A|1260
7RR5|1|C1|G|1261
7RR5|1|C1|G|1262
*
7RR5|1|C1|C|1277
7RR5|1|C1|A|1278
7RR5|1|C1|C|1279

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P0

RPP0 isoform 1

Chain P2

RPL12A isoform 1