J3_7RR5_008

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7RR5|1|C1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0839

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7RR5|1|C1|U|1479
7RR5|1|C1|G|1480
7RR5|1|C1|A|1481
7RR5|1|C1|A|1482
7RR5|1|C1|G|1483
7RR5|1|C1|U|1484
7RR5|1|C1|G|1485
*
7RR5|1|C1|C|1857
7RR5|1|C1|A|1858
7RR5|1|C1|A|1859
*
7RR5|1|C1|U|1871
7RR5|1|C1|C|1872
7RR5|1|C1|U|1873
7RR5|1|C1|A|1874

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain Lg

60S ribosomal protein L34-A