J3_7RR5_017

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_017 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1442

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7RR5|1|C2|A|41
7RR5|1|C2|G|42
*
7RR5|1|C2|C|433
7RR5|1|C2|G|434
7RR5|1|C2|C|435
7RR5|1|C2|A|436
7RR5|1|C2|A|437
7RR5|1|C2|A|438
7RR5|1|C2|U|439
*
7RR5|1|C2|A|464
7RR5|1|C2|G|465
7RR5|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23