J3_7RR5_026
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7RR5_026 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1651
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7RR5|1|C2|U|1283
7RR5|1|C2|C|1284
7RR5|1|C2|U|1285
7RR5|1|C2|U|1286
7RR5|1|C2|A|1287
7RR5|1|C2|G|1288
*
7RR5|1|C2|C|1327
7RR5|1|C2|G|1328
7RR5|1|C2|A|1329
7RR5|1|C2|G|1330
7RR5|1|C2|A|1331
7RR5|1|C2|C|1332
*
7RR5|1|C2|G|1419
7RR5|1|C2|C|1420
7RR5|1|C2|A|1421
7RR5|1|C2|A|1422
7RR5|1|C2|U|1423
7RR5|1|C2|A|1424
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SC
- RPS2 isoform 1
- Chain SD
- RPS3 isoform 1
- Chain SQ
- 40S ribosomal protein S16-A
- Chain SR
- 40S ribosomal protein S17-A
- Chain SU
- RPS20 isoform 1
- Chain Sd
- RPS29A isoform 1
Coloring options: