J3_7RR5_033
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7RR5|1|C1|U|343, 7RR5|1|C1|A|351, 7RR5|1|C3|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7RR5_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0713
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7RR5|1|C1|C|340
7RR5|1|C1|G|341
7RR5|1|C1|A|342
7RR5|1|C1|U|343
7RR5|1|C1|A|344
7RR5|1|C1|G|345
7RR5|1|C1|C|346
7RR5|1|C1|G|347
7RR5|1|C1|A|348
7RR5|1|C1|A|349
7RR5|1|C1|C|350
7RR5|1|C1|A|351
7RR5|1|C1|A|352
7RR5|1|C1|G|353
7RR5|1|C1|U|354
7RR5|1|C1|A|355
7RR5|1|C1|C|356
*
7RR5|1|C1|G|363
7RR5|1|C1|G|364
7RR5|1|C1|A|365
7RR5|1|C1|A|366
7RR5|1|C1|A|367
7RR5|1|C1|G|368
*
7RR5|1|C3|C|21
7RR5|1|C3|U|22
7RR5|1|C3|U|23
7RR5|1|C3|G|24
Current chains
- Chain C1
- 25S rRNA
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain LC
- RPL4A isoform 1
- Chain LY
- 60S ribosomal protein L26-A
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: