3D structure

PDB id
7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosomal complex bound with Rbg1/Tma46
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
AAC*GGACUA*UGGAAGUUU
Length
18 nucleotides
Bulged bases
7RR5|1|C2|U|1390, 7RR5|1|C2|U|1413, 7RR5|1|C2|U|1414
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7RR5_041 not in the Motif Atlas
Homologous match to J3_8C3A_086
Geometric discrepancy: 0.1191
The information below is about J3_8C3A_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_80847.1
Basepair signature
cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

7RR5|1|C2|A|1336
7RR5|1|C2|A|1337
7RR5|1|C2|C|1338
*
7RR5|1|C2|G|1386
7RR5|1|C2|G|1387
7RR5|1|C2|A|1388
7RR5|1|C2|C|1389
7RR5|1|C2|U|1390
7RR5|1|C2|A|1391
*
7RR5|1|C2|U|1407
7RR5|1|C2|G|1408
7RR5|1|C2|G|1409
7RR5|1|C2|A|1410
7RR5|1|C2|A|1411
7RR5|1|C2|G|1412
7RR5|1|C2|U|1413
7RR5|1|C2|U|1414
7RR5|1|C2|U|1415

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SF
Rps5p
Chain SQ
40S ribosomal protein S16-A
Chain SR
40S ribosomal protein S17-A
Chain SU
RPS20 isoform 1
Chain Sd
RPS29A isoform 1
Chain Sg
Guanine nucleotide-binding protein subunit beta-like protein

Coloring options:


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