J3_7RYF_006

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAG*CCGAAAC*GUG

Length

14 nucleotides

Bulged bases

7RYF|1|A|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYF_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.144

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

7RYF|1|A|C|1301
7RYF|1|A|A|1302
7RYF|1|A|A|1303
7RYF|1|A|G|1304
*
7RYF|1|A|C|1603
7RYF|1|A|C|1604
7RYF|1|A|G|1605
7RYF|1|A|A|1606
7RYF|1|A|A|1607
7RYF|1|A|A|1608
7RYF|1|A|C|1609
*
7RYF|1|A|G|1618
7RYF|1|A|U|1619
7RYF|1|A|G|1620

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34