J3_7RYF_020

3D structure

PDB id

7RYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYF_020 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1802

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7RYF|1|a|C|987
7RYF|1|a|U|988
7RYF|1|a|U|989
7RYF|1|a|G|990
*
7RYF|1|a|C|1042
7RYF|1|a|A|1043
7RYF|1|a|G|1044
*
7RYF|1|a|C|1207
7RYF|1|a|U|1208
7RYF|1|a|U|1209
7RYF|1|a|A|1210
7RYF|1|a|C|1211
7RYF|1|a|G|1212

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14