J3_7RYG_006

3D structure

PDB id

7RYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAAG*CCGAAAC*GUG

Length

14 nucleotides

Bulged bases

7RYG|1|A|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYG_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1587

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

7RYG|1|A|C|1301
7RYG|1|A|A|1302
7RYG|1|A|A|1303
7RYG|1|A|G|1304
*
7RYG|1|A|C|1603
7RYG|1|A|C|1604
7RYG|1|A|G|1605
7RYG|1|A|A|1606
7RYG|1|A|A|1607
7RYG|1|A|A|1608
7RYG|1|A|C|1609
*
7RYG|1|A|G|1618
7RYG|1|A|U|1619
7RYG|1|A|G|1620

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34