J3_7RYH_006

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAAG*CCGAAAC*GUG

Length

14 nucleotides

Bulged bases

7RYH|1|A|A|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYH_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1592

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

7RYH|1|A|C|1301
7RYH|1|A|A|1302
7RYH|1|A|A|1303
7RYH|1|A|G|1304
*
7RYH|1|A|C|1603
7RYH|1|A|C|1604
7RYH|1|A|G|1605
7RYH|1|A|A|1606
7RYH|1|A|A|1607
7RYH|1|A|A|1608
7RYH|1|A|C|1609
*
7RYH|1|A|G|1618
7RYH|1|A|U|1619
7RYH|1|A|G|1620

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34