J3_7RYH_008

3D structure

PDB id

7RYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-TP-6076 complex: Empty 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RYH_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0904

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7RYH|1|A|C|2087
7RYH|1|A|U|2088
7RYH|1|A|G|2089
*
7RYH|1|A|C|2192
7RYH|1|A|U|2193
7RYH|1|A|A|2194
7RYH|1|A|A|2195
7RYH|1|A|C|2196
*
7RYH|1|A|G|2219
7RYH|1|A|G|2220
7RYH|1|A|A|2221
7RYH|1|A|C|2222
7RYH|1|A|C|2223
7RYH|1|A|G|2224

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28