J3_7S0S_004

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

7S0S|1|C|U|801, 7S0S|1|C|A|907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S0S_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0715

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7S0S|1|C|U|798
7S0S|1|C|G|799
7S0S|1|C|A|800
7S0S|1|C|U|801
7S0S|1|C|C|802
7S0S|1|C|U|803
7S0S|1|C|A|804
*
7S0S|1|C|U|888
7S0S|1|C|A|889
7S0S|1|C|G|890
*
7S0S|1|C|C|906
7S0S|1|C|A|907
7S0S|1|C|A|908
7S0S|1|C|A|909

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain e

50S ribosomal protein L34