J3_7S0S_011

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S0S_011 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2603

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7S0S|1|C|U|1646
7S0S|1|C|G|1647
7S0S|1|C|A|1648
7S0S|1|C|C|1649
7S0S|1|C|G|1650
*
7S0S|1|C|C|1784
7S0S|1|C|C|1785
*
7S0S|1|C|G|1788
7S0S|1|C|A|1789
7S0S|1|C|A|1790
7S0S|1|C|A|1791
7S0S|1|C|A|1792
7S0S|1|C|G|1793

Current chains

Chain C

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2