J3_7S1H_017

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1H_017 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0493

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7S1H|1|I|C|698
7S1H|1|I|A|699
7S1H|1|I|G|700
*
7S1H|1|I|C|732
7S1H|1|I|G|733
7S1H|1|I|A|734
7S1H|1|I|A|735
7S1H|1|I|C|736
*
7S1H|1|I|G|760
7S1H|1|I|A|761
7S1H|1|I|U|762
7S1H|1|I|G|763

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2