J3_7S1I_006

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_006 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0668

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7S1I|1|C|U|943
7S1I|1|C|G|944
7S1I|1|C|G|945
7S1I|1|C|A|946
*
7S1I|1|C|U|1235
7S1I|1|C|A|1236
7S1I|1|C|C|1237
*
7S1I|1|C|G|1337
7S1I|1|C|G|1338
7S1I|1|C|A|1339
7S1I|1|C|A|1340

Current chains

Chain C

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain p

30S ribosomal protein S9

Chain u

30S ribosomal protein S13