J3_7S1I_008

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_008 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1276

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7S1I|1|C|C|990
7S1I|1|C|U|991
7S1I|1|C|U|992
7S1I|1|C|G|993
*
7S1I|1|C|C|1045
7S1I|1|C|A|1046
7S1I|1|C|G|1047
*
7S1I|1|C|C|1210
7S1I|1|C|U|1211
7S1I|1|C|U|1212
7S1I|1|C|A|1213
7S1I|1|C|C|1214
7S1I|1|C|G|1215

Current chains

Chain C

16S rRNA

Nearby chains

Chain v

30S ribosomal protein S14