J3_7S1I_013

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7S1I|1|C|U|1240, 7S1I|1|C|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.118

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7S1I|1|C|C|1237
7S1I|1|C|A|1238
7S1I|1|C|A|1239
7S1I|1|C|U|1240
7S1I|1|C|G|1241
*
7S1I|1|C|C|1296
7S1I|1|C|G|1297
7S1I|1|C|U|1298
7S1I|1|C|A|1299
7S1I|1|C|G|1300
7S1I|1|C|U|1301
7S1I|1|C|C|1302
7S1I|1|C|C|1303
*
7S1I|1|C|G|1334
7S1I|1|C|U|1335
7S1I|1|C|C|1336
7S1I|1|C|G|1337

Current chains

Chain C

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S7

Chain u

30S ribosomal protein S13