J3_7S1I_022

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1I_022 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0747

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7S1I|1|I|C|2091
7S1I|1|I|U|2092
7S1I|1|I|G|2093
*
7S1I|1|I|C|2196
7S1I|1|I|U|2197
7S1I|1|I|A|2198
7S1I|1|I|A|2199
7S1I|1|I|C|2200
*
7S1I|1|I|G|2223
7S1I|1|I|G|2224
7S1I|1|I|A|2225
7S1I|1|I|C|2226
7S1I|1|I|A|2227
7S1I|1|I|G|2228

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28