J3_7S1I_034
3D structure
- PDB id
- 7S1I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7S1I|1|I|A|504, 7S1I|1|I|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7S1I_034 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.1206
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7S1I|1|I|G|30
7S1I|1|I|C|31
*
7S1I|1|I|G|474
7S1I|1|I|C|475
7S1I|1|I|G|476
7S1I|1|I|A|477
7S1I|1|I|A|478
7S1I|1|I|A|479
7S1I|1|I|A|480
7S1I|1|I|G|481
7S1I|1|I|A|482
7S1I|1|I|A|483
7S1I|1|I|C|484
*
7S1I|1|I|G|496
7S1I|1|I|A|497
7S1I|1|I|G|498
7S1I|1|I|U|499
7S1I|1|I|G|500
7S1I|1|I|A|501
7S1I|1|I|A|502
7S1I|1|I|A|503
7S1I|1|I|A|504
7S1I|1|I|A|505
7S1I|1|I|G|506
7S1I|1|I|A|507
7S1I|1|I|A|508
7S1I|1|I|C|509
7S1I|1|I|C|510
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L20
- Chain a
- 50S ribosomal protein L22
- Chain c
- 50S ribosomal protein L24
Coloring options: