J3_7S1I_035
3D structure
- PDB id
- 7S1I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7S1I|1|I|U|34, 7S1I|1|I|U|448, 7S1I|1|I|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7S1I_035 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0503
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7S1I|1|I|C|32
7S1I|1|I|C|33
7S1I|1|I|U|34
7S1I|1|I|G|35
*
7S1I|1|I|C|445
7S1I|1|I|G|446
7S1I|1|I|A|447
7S1I|1|I|U|448
7S1I|1|I|A|449
7S1I|1|I|G|450
7S1I|1|I|U|451
7S1I|1|I|G|452
7S1I|1|I|A|453
7S1I|1|I|A|454
7S1I|1|I|C|455
7S1I|1|I|C|456
7S1I|1|I|A|457
7S1I|1|I|G|458
7S1I|1|I|U|459
7S1I|1|I|A|460
7S1I|1|I|C|461
*
7S1I|1|I|G|468
7S1I|1|I|G|469
7S1I|1|I|A|470
7S1I|1|I|A|471
7S1I|1|I|A|472
7S1I|1|I|G|473
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain Y
- 50S ribosomal protein L20
- Chain b
- 50S ribosomal protein L23
- Chain k
- 50S ribosomal protein L34
Coloring options: