3D structure

PDB id
7S1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.47 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7S1J_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0804
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

7S1J|1|C|C|936
7S1J|1|C|A|937
7S1J|1|C|A|938
7S1J|1|C|G|939
*
7S1J|1|C|C|1344
7S1J|1|C|U|1345
7S1J|1|C|A|1346
7S1J|1|C|G|1347
7S1J|1|C|U|1348
7S1J|1|C|A|1349
7S1J|1|C|A|1350
*
7S1J|1|C|U|1372
7S1J|1|C|G|1373
7S1J|1|C|A|1374
7S1J|1|C|A|1375
7S1J|1|C|U|1376
7S1J|1|C|A|1377
7S1J|1|C|C|1378
7S1J|1|C|G|1379

Current chains

Chain C
16S rRNA

Nearby chains

Chain n
30S ribosomal protein S7
Chain p
30S ribosomal protein S9

Coloring options:


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