J3_7S1J_032

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7S1J|1|I|U|34, 7S1J|1|I|U|448, 7S1J|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S1J_032 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0559

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7S1J|1|I|C|32
7S1J|1|I|C|33
7S1J|1|I|U|34
7S1J|1|I|G|35
*
7S1J|1|I|C|445
7S1J|1|I|G|446
7S1J|1|I|A|447
7S1J|1|I|U|448
7S1J|1|I|A|449
7S1J|1|I|G|450
7S1J|1|I|U|451
7S1J|1|I|G|452
7S1J|1|I|A|453
7S1J|1|I|A|454
7S1J|1|I|C|455
7S1J|1|I|C|456
7S1J|1|I|A|457
7S1J|1|I|G|458
7S1J|1|I|U|459
7S1J|1|I|A|460
7S1J|1|I|C|461
*
7S1J|1|I|G|468
7S1J|1|I|G|469
7S1J|1|I|A|470
7S1J|1|I|A|471
7S1J|1|I|A|472
7S1J|1|I|G|473

Current chains

Chain I

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain Y

50S ribosomal protein L20

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34