J3_7S1K_007
3D structure
- PDB id
- 7S1K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 7S1K|1|C|A|975, 7S1K|1|C|G|976, 7S1K|1|C|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7S1K_007 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.07
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7S1K|1|C|U|955
7S1K|1|C|U|956
7S1K|1|C|U|957
7S1K|1|C|A|958
7S1K|1|C|A|959
7S1K|1|C|U|960
7S1K|1|C|U|961
7S1K|1|C|C|962
*
7S1K|1|C|G|973
7S1K|1|C|A|974
7S1K|1|C|A|975
7S1K|1|C|G|976
7S1K|1|C|A|977
7S1K|1|C|A|978
7S1K|1|C|C|979
7S1K|1|C|C|980
7S1K|1|C|U|981
7S1K|1|C|U|982
7S1K|1|C|A|983
7S1K|1|C|C|984
*
7S1K|1|C|G|1221
7S1K|1|C|G|1222
7S1K|1|C|C|1223
7S1K|1|C|U|1224
7S1K|1|C|A|1225
Current chains
- Chain C
- 16S rRNA
Nearby chains
- Chain 1
- 30S ribosomal protein S19
- Chain q
- 30S ribosomal protein S10
- Chain u
- 30S ribosomal protein S13
- Chain v
- 30S ribosomal protein S14
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