J3_7S9U_004

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0813

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7S9U|1|A|C|745
7S9U|1|A|A|746
7S9U|1|A|G|747
*
7S9U|1|A|C|779
7S9U|1|A|G|780
7S9U|1|A|A|781
7S9U|1|A|A|782
7S9U|1|A|C|783
*
7S9U|1|A|G|807
7S9U|1|A|A|808
7S9U|1|A|U|809
7S9U|1|A|G|810

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain C

50S ribosomal protein L2