J3_7S9U_005

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

7S9U|1|A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1501

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

7S9U|1|A|C|1337
7S9U|1|A|G|1338
7S9U|1|A|A|1339
7S9U|1|A|A|1340
7S9U|1|A|U|1341
7S9U|1|A|G|1342
*
7S9U|1|A|C|1670
7S9U|1|A|G|1671
7S9U|1|A|A|1672
*
7S9U|1|A|U|1684
7S9U|1|A|A|1685
7S9U|1|A|A|1686
7S9U|1|A|G|1687

Current chains

Chain A

RNA (2436-MER)

Nearby chains