J3_7S9U_009

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_009 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.1803

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

7S9U|1|A|C|2818
7S9U|1|A|A|2819
7S9U|1|A|U|2820
*
7S9U|1|A|A|2831
7S9U|1|A|G|2832
7S9U|1|A|U|2833
7S9U|1|A|A|2834
7S9U|1|A|A|2835
7S9U|1|A|G|2836
*
7S9U|1|A|C|2914
7S9U|1|A|G|2915
7S9U|1|A|A|2916
7S9U|1|A|G|2917
7S9U|1|A|G|2918

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain D

50S ribosomal protein L3