J3_7S9U_014

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGCCAUAGGA*UGUAG

Length

20 nucleotides

Bulged bases

7S9U|1|A|U|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_014 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1117

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|U|340
7S9U|1|A|G|341
7S9U|1|A|A|342
7S9U|1|A|A|343
7S9U|1|A|G|344
*
7S9U|1|A|C|360
7S9U|1|A|G|361
7S9U|1|A|C|362
7S9U|1|A|C|363
7S9U|1|A|A|364
7S9U|1|A|U|365
7S9U|1|A|A|366
7S9U|1|A|G|367
7S9U|1|A|G|368
7S9U|1|A|A|369
*
7S9U|1|A|U|381
7S9U|1|A|G|382
7S9U|1|A|U|383
7S9U|1|A|A|384
7S9U|1|A|G|385

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24