J3_7S9U_016

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7S9U_016 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0951

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|G|1470
7S9U|1|A|G|1471
7S9U|1|A|G|1472
7S9U|1|A|A|1473
7S9U|1|A|C|1474
7S9U|1|A|G|1475
*
7S9U|1|A|C|1612
7S9U|1|A|C|1613
*
7S9U|1|A|G|1616
7S9U|1|A|A|1617
7S9U|1|A|A|1618
7S9U|1|A|A|1619
7S9U|1|A|A|1620
7S9U|1|A|G|1621
7S9U|1|A|C|1622

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain C

50S ribosomal protein L2