J3_7SA4_003

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7SA4|1|1|U|686, 7SA4|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.2051

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7SA4|1|1|U|683
7SA4|1|1|G|684
7SA4|1|1|A|685
7SA4|1|1|U|686
7SA4|1|1|C|687
7SA4|1|1|U|688
7SA4|1|1|A|689
*
7SA4|1|1|U|773
7SA4|1|1|G|774
7SA4|1|1|G|775
*
7SA4|1|1|C|791
7SA4|1|1|A|792
7SA4|1|1|A|793
7SA4|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34