J3_7SA4_007

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7SA4|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_007 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1068

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7SA4|1|1|C|1306
7SA4|1|1|A|1307
7SA4|1|1|A|1308
7SA4|1|1|G|1309
*
7SA4|1|1|C|1605
7SA4|1|1|C|1606
7SA4|1|1|C|1607
7SA4|1|1|A|1608
7SA4|1|1|A|1609
7SA4|1|1|A|1610
7SA4|1|1|C|1611
*
7SA4|1|1|G|1620
7SA4|1|1|U|1621
7SA4|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34