J3_7SA4_009

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_009 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.1249

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7SA4|1|1|C|2091
7SA4|1|1|U|2092
7SA4|1|1|G|2093
*
7SA4|1|1|C|2196
7SA4|1|1|U|2197
7SA4|1|1|A|2198
7SA4|1|1|A|2199
7SA4|1|1|C|2200
*
7SA4|1|1|G|2223
7SA4|1|1|G|2224
7SA4|1|1|A|2225
7SA4|1|1|C|2226
7SA4|1|1|A|2227
7SA4|1|1|G|2228

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28