J3_7SA4_018

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.088

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7SA4|1|2|C|936
7SA4|1|2|A|937
7SA4|1|2|A|938
7SA4|1|2|G|939
*
7SA4|1|2|C|1344
7SA4|1|2|U|1345
7SA4|1|2|A|1346
7SA4|1|2|G|1347
7SA4|1|2|U|1348
7SA4|1|2|A|1349
7SA4|1|2|A|1350
*
7SA4|1|2|U|1372
7SA4|1|2|G|1373
7SA4|1|2|A|1374
7SA4|1|2|A|1375
7SA4|1|2|U|1376
7SA4|1|2|A|1377
7SA4|1|2|C|1378
7SA4|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9