J3_7SA4_021

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

7SA4|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SA4_021 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1388

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7SA4|1|2|C|990
7SA4|1|2|U|991
7SA4|1|2|U|992
7SA4|1|2|G|993
*
7SA4|1|2|C|1045
7SA4|1|2|A|1046
7SA4|1|2|G|1047
*
7SA4|1|2|C|1210
7SA4|1|2|U|1211
7SA4|1|2|U|1212
7SA4|1|2|A|1213
7SA4|1|2|C|1214
7SA4|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

30S ribosomal protein S14