J3_7SFR_005

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

7SFR|1|A|U|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SFR_005 not in the Motif Atlas

Homologous match to J3_9DFE_009

Geometric discrepancy: 0.5638

The information below is about J3_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SFR|1|A|G|1184
7SFR|1|A|G|1185
7SFR|1|A|A|1186
*
7SFR|1|A|U|1210
7SFR|1|A|U|1211
7SFR|1|A|G|1212
7SFR|1|A|A|1213
7SFR|1|A|A|1214
7SFR|1|A|A|1215
7SFR|1|A|G|1216
*
7SFR|1|A|C|1231
7SFR|1|A|A|1232
7SFR|1|A|C|1233

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36