J3_7SFR_031

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

7SFR|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SFR_031 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1275

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7SFR|1|A|G|379
7SFR|1|A|G|380
7SFR|1|A|A|381
7SFR|1|A|A|382
7SFR|1|A|G|383
*
7SFR|1|A|U|399
7SFR|1|A|G|400
7SFR|1|A|C|401
7SFR|1|A|C|402
7SFR|1|A|G|403
7SFR|1|A|U|404
7SFR|1|A|A|405
7SFR|1|A|G|406
7SFR|1|A|A|407
7SFR|1|A|C|408
*
7SFR|1|A|G|420
7SFR|1|A|G|421
7SFR|1|A|U|422
7SFR|1|A|A|423
7SFR|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24