J3_7SS9_004

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SS9_004 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1598

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7SS9|1|1|C|698
7SS9|1|1|A|699
7SS9|1|1|G|700
*
7SS9|1|1|C|732
7SS9|1|1|G|733
7SS9|1|1|A|734
7SS9|1|1|A|735
7SS9|1|1|C|736
*
7SS9|1|1|G|760
7SS9|1|1|A|761
7SS9|1|1|U|762
7SS9|1|1|G|763

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2