J3_7SSD_009
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SSD_009 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.1045
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
7SSD|1|1|C|2091
7SSD|1|1|U|2092
7SSD|1|1|G|2093
*
7SSD|1|1|C|2196
7SSD|1|1|U|2197
7SSD|1|1|A|2198
7SSD|1|1|A|2199
7SSD|1|1|C|2200
*
7SSD|1|1|G|2223
7SSD|1|1|G|2224
7SSD|1|1|A|2225
7SSD|1|1|C|2226
7SSD|1|1|A|2227
7SSD|1|1|G|2228
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
- Chain g
- 50S ribosomal protein L9
- Chain x
- 50S ribosomal protein L28
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