J3_7SSL_021

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

7SSL|1|3|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SSL_021 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2513

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

7SSL|1|3|C|990
7SSL|1|3|U|991
7SSL|1|3|U|992
7SSL|1|3|G|993
*
7SSL|1|3|C|1045
7SSL|1|3|A|1046
7SSL|1|3|G|1047
*
7SSL|1|3|C|1210
7SSL|1|3|U|1211
7SSL|1|3|U|1212
7SSL|1|3|A|1213
7SSL|1|3|C|1214
7SSL|1|3|G|1215

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain S

30S ribosomal protein S14