3D structure

PDB id
7SSL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7SSL|1|3|A|975, 7SSL|1|3|G|976, 7SSL|1|3|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSL_039 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1681
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7SSL|1|3|U|955
7SSL|1|3|U|956
7SSL|1|3|U|957
7SSL|1|3|A|958
7SSL|1|3|A|959
7SSL|1|3|U|960
7SSL|1|3|U|961
7SSL|1|3|C|962
*
7SSL|1|3|G|973
7SSL|1|3|A|974
7SSL|1|3|A|975
7SSL|1|3|G|976
7SSL|1|3|A|977
7SSL|1|3|A|978
7SSL|1|3|C|979
7SSL|1|3|C|980
7SSL|1|3|U|981
7SSL|1|3|U|982
7SSL|1|3|A|983
7SSL|1|3|C|984
*
7SSL|1|3|G|1221
7SSL|1|3|G|1222
7SSL|1|3|C|1223
7SSL|1|3|U|1224
7SSL|1|3|A|1225

Current chains

Chain 3
16S rRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain O
30S ribosomal protein S10
Chain R
30S ribosomal protein S13
Chain S
30S ribosomal protein S14
Chain X
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.196 s