3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
7SSN|1|1|U|2833, 7SSN|1|1|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSN_013 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1889
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

7SSN|1|1|G|2812
7SSN|1|1|A|2813
7SSN|1|1|A|2814
7SSN|1|1|C|2815
*
7SSN|1|1|G|2831
7SSN|1|1|U|2832
7SSN|1|1|U|2833
7SSN|1|1|G|2834
7SSN|1|1|A|2835
7SSN|1|1|U|2836
*
7SSN|1|1|A|2882
7SSN|1|1|A|2883
7SSN|1|1|U|2884
7SSN|1|1|G|2885
7SSN|1|1|A|2886
7SSN|1|1|A|2887
7SSN|1|1|C|2888

Current chains

Chain 1
23S rRNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain c
50S ribosomal protein L3
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1731 s