3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
7SSN|1|3|A|975, 7SSN|1|3|G|976, 7SSN|1|3|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSN_021 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.093
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7SSN|1|3|U|955
7SSN|1|3|U|956
7SSN|1|3|U|957
7SSN|1|3|A|958
7SSN|1|3|A|959
7SSN|1|3|U|960
7SSN|1|3|U|961
7SSN|1|3|C|962
*
7SSN|1|3|G|973
7SSN|1|3|A|974
7SSN|1|3|A|975
7SSN|1|3|G|976
7SSN|1|3|A|977
7SSN|1|3|A|978
7SSN|1|3|C|979
7SSN|1|3|C|980
7SSN|1|3|U|981
7SSN|1|3|U|982
7SSN|1|3|A|983
7SSN|1|3|C|984
*
7SSN|1|3|G|1221
7SSN|1|3|G|1222
7SSN|1|3|C|1223
7SSN|1|3|U|1224
7SSN|1|3|A|1225

Current chains

Chain 3
16S rRNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain O
30S ribosomal protein S10
Chain R
30S ribosomal protein S13
Chain S
30S ribosomal protein S14
Chain X
30S ribosomal protein S19

Coloring options:


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