3D structure

PDB id
7SSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre translocation 70S ribosome with A/P* and P/E tRNA (Structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7SSN|1|1|A|504, 7SSN|1|1|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7SSN_027 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1173
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7SSN|1|1|G|30
7SSN|1|1|C|31
*
7SSN|1|1|G|474
7SSN|1|1|C|475
7SSN|1|1|G|476
7SSN|1|1|A|477
7SSN|1|1|A|478
7SSN|1|1|A|479
7SSN|1|1|A|480
7SSN|1|1|G|481
7SSN|1|1|A|482
7SSN|1|1|A|483
7SSN|1|1|C|484
*
7SSN|1|1|G|496
7SSN|1|1|A|497
7SSN|1|1|G|498
7SSN|1|1|U|499
7SSN|1|1|G|500
7SSN|1|1|A|501
7SSN|1|1|A|502
7SSN|1|1|A|503
7SSN|1|1|A|504
7SSN|1|1|A|505
7SSN|1|1|G|506
7SSN|1|1|A|507
7SSN|1|1|A|508
7SSN|1|1|C|509
7SSN|1|1|C|510

Current chains

Chain 1
23S rRNA

Nearby chains

Chain q
50S ribosomal protein L20
Chain s
50S ribosomal protein L22
Chain u
50S ribosomal protein L24

Coloring options:


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